Carbonic anhydrases (or carbonate dehydratases) and inhibitors
The carbonic anhydrases (or carbonate dehydratases) (EC 4.2.1.1) form a family of enzymes that catalyze the interconversion between carbon dioxide and water and the dissociated ions of carbonic acid (i.e. bicarbonate and hydrogen ions). The active site of most carbonic anhydrases contains a zinc ion. They are therefore classified as metalloenzymes. The enzyme maintains acid-base balance and helps transport carbon dioxide.
- Badger MR, Price GD (1994). “The role of carbonic anhydrase in photosynthesis”. Annu. Rev. Plant Physiol. Plant Mol. Biol. 45: 369–392. doi:10.1146/annurev.pp.45.060194.002101.
- “PDB101: Molecule of the Month: Carbonic Anhydrase”. RCSB: PDB-101. Retrieved 3 December 2018.
Carbonic anhydrase helps maintain acid–base homeostasis, regulate pH, and fluid balance. Depending on its location, the role of the enzyme changes slightly. For example, carbonic anhydrase produces acid in the stomach lining. In the kidney, the control of bicarbonate ions influences the water content of the cell. The control of bicarbonate ions also influences the water content in the eyes. Inhibitors of carbonic anhydrase are used to treat glaucoma, the excessive build-up of water in the eyes. Blocking this enzyme shifts the fluid balance in the eyes to reduce fluid build-up thereby relieving pressure.
- “PDB101: Molecule of the Month: Carbonic Anhydrase”. RCSB: PDB-101. Retrieved 3 December 2018.
- Supuran CT (27 May 2004). “Carbonic Anhydrases: Catalytic and Inhibition Mechanisms, Distribution and Physiological Roles”. In Supuran CT, Scozzafava A, Conway J (eds.). Carbonic Anhydrases. Taylor & Francis. doi:10.1201/9780203475300. ISBN 9780203475300.
Carbonic anhydrase is critical to hemoglobin function via the Bohr effect which catalyzes the hydration of carbon dioxide to form carbonic acid and rapidly dissociate into water. Essentially an increase in carbon dioxide results in lowered blood pH, which lowers oxygen-hemoglobin binding. The opposite is true where a decrease in the concentration of carbon dioxide raises the blood pH which raises the rate of oxygen-hemoglobin binding. Relating the Bohr effect to carbonic anhydrase is simple: carbonic anhydrase speeds up the reaction of carbon dioxide reacting with water to produce hydrogen ions (protons) and bicarbonate ions.
- Occhipinti R, Boron WF (August 2019). “Role of Carbonic Anhydrases and Inhibitors in Acid-Base Physiology: Insights from Mathematical Modeling”. International Journal of Molecular Sciences. 20 (15): 3841. doi:10.3390/ijms20153841. PMID 31390837.
- “Bohr Effect”. www.pathwaymedicine.org. Retrieved 23 November 2019.
To describe equilibrium in the carbonic anhydrase reaction, Le Chatelier’s principle is used. The tissues are more acidic than the lungs because carbon dioxide is produced by cellular respiration and it reacts with water in the tissues to produce the hydrogen protons. Because the carbon dioxide concentration is higher, equilibrium shifts to the right, to the bicarbonate side. The opposite is seen in the lungs, where carbon dioxide is being released so its concentration is lower so equilibrium shifts to the left towards carbon dioxide to try to raise its concentration.
- “Le Chatelier’s Principle”. www.chemguide.co.uk. Retrieved 23 November 2019.
Occurrence and function
Carbonic anhydrase was initially found in the red blood cells of cows in 1933 and was simultaneously discovered by Rougton in Cambridge and Meldrum in Philadelphia who were searching for a catalytic factor.
- Dodgson SJ (1991). “The Carbonic Anhydrases”. In Dodgson SJ, Tashian RD, Gros G, Carter ND (eds.). The Carbonic Anhydrases: Cellular Physiology and Molecular Genetics. Boston, MA: Springer US. pp. 3–14. doi:10.1007/978-1-4899-0750-9_1. ISBN 978-1-4899-0750-9.
Regulation of pH
Carbonic anhydrase plays an essential role in regulating the blood pH, which speeds up the CO2 + H2O ↽−−⇀
HCO3–+ H+ reaction to ensure the equilibrium balance is rapidly maintained. The equilibrium reaction is influenced by the proportion of bicarbonate and H+ to carbon dioxide. The HCO3– is a conjugate base that neutralizes acids, and the H+ is a conjugate acid that neutralizes bases by Acid-base homeostasis. The HCO3– and H+ are ideal for buffering pH in the blood and tissues because the pKa is close to the physiological pH = 7.2 – 7.6. Since HCO3– and H+ are regulated in the kidneys and plasma carbon dioxide is regulated in the lungs, both actions in the kidneys and lungs are important to maintain the stability of blood pH. Therefore, carbonic anhydrase helps with the H+ secretion into the lumen of the kidney renal tubule and the reabsorption of HCO3– in the kidneys. Also, it helps the carbon dioxide transport from the lung tissue to the alveoli in the pulmonary capillary, where the carbon dioxide will be excreted during exhalation.
- Deutsch HF (1 January 1987). “Carbonic anhydrases”. International Journal of Biochemistry. 19 (2): 101–113. doi:10.1016/0020-711X(87)90320-X. ISSN 0020-711X.
Carbonic anhydrase is a very ancient enzyme found in both domains of prokaryotes that exists in six different classes among most of the living organisms. These families are not similar in sequence or structure because they evolved independently of each other, but all evolved the same Zn2+ active site structure, showing a great example of convergent evolution.
- Chegwidden WR, Carter ND (2000). “Introduction to the carbonic anhydrases”. In Chegwidden WR, Carter ND, Edwards YH (eds.). The Carbonic Anhydrases. Basel: Birkhäuser. pp. 13–28. doi:10.1007/978-3-0348-8446-4_2. ISBN 978-3-0348-8446-4.
Background
An enzyme is a substance that acts as a catalyst in living organisms which helps to speed up chemical reactions. Carbonic anhydrase is one important enzyme that is found in red blood cells, gastric mucosa, pancreatic cells, and even renal tubules. It was discovered in the year 1932 and it has been categorized into three general classes. Class one being alpha carbonic anhydrase which is found in mammals, class two being beta carbonic anhydrase which is found in bacteria and plants and lastly, class three which is gamma carbonic anhydrase which is found in methanogen bacteria in hot springs. The three classes of carbonic anhydrase all have the same active site with a Zn metal center; however, they are not structurally similar to each other. The main role of carbonic anhydrase in humans is to catalyze the conversion of carbon dioxide to carbonic acid and back again. However, it can also help with CO2 transport in the blood which in turn helps respiration. It can even function in the formation of hydrochloric acid by the stomach.[Citation needed] Therefore, the role of carbonic anhydrase depends on where it is found in the body.
- “Britannica Dictionary”.
- Maren TH (October 1967). “Carbonic anhydrase: chemistry, physiology, and inhibition”. Physiological Reviews. 47 (4): 595–781. doi:10.1152/physrev.1967.47.4.595. PMID 4964060. S2CID 19954840.
- Bertini I, Gray H, Stiefel E, Valentine J (2007). Biological Inorganic Chemistry: Structure and Reactivity (1st ed.). Sausalito, California: University Science Books. section IX.1.3.1. p. 180. ISBN 978-1-891389-43-6.
Structure
In mammalian CA II, the active site consists of the following: a hard Lewis acid Zn+2 metal atom coordinated to His -94, -96, and -119 residues 109˚ apart from one another and a hydroxide ion (pKa=6.8; 120° in Td configuration, a hydrophobic pocket adjacent to Zinc-bound hydroxide consisting of by Val-143 at its base and Val-121, Trp-209, and Leu-198 at its neck, a Proton Shuttling Residue (PSR) His-64 H+ shuttles H+ in and out of active site via conformational switching, and a hydrogen bonding network consisting of Thr-199 hydroxyl group and Glu-106 the carboxyl group which stabilizes the Zinc-bound hydroxide by facilitating the orientation of water molecules in the active side to a specific geometric configuration. CA II has a turnover frequency of 106 s−1 which is 107 times faster than the uncatalyzed reaction.
Reaction
See also: carbonic acid
The reaction that shows the catalyzation of carbonic anhydrase in our tissues is:
CO2 + H2O ⟶ H2CO3 ⟶ H+ + HCO−3
The catalyzation of carbonic anhydrase in the lungs is shown by:
H+ + HCO−3 ⟶ H2CO3 ⟶ CO2 + H2O
The reason for the reactions being in opposite directions for the tissues and lungs is because of the different pH levels found in them. Without the carbonic anhydrase catalyst, the reaction is very slow, however with the catalyst the reaction is 107 times faster.
The reaction catalyzed by carbonic anhydrase is:
HCO−3 + H+ ⇌ CO2 + H2O
Carbonic acid has a pKa of around 6.36 (the exact value depends on the medium), so at pH 7 a small percentage of the bicarbonate is protonated.
Carbonic anhydrase is one of the fastest enzymes, and its rate is typically limited by the diffusion rate of its substrates. Typical catalytic rates of the different forms of this enzyme ranging between 104 and 106 reactions per second.
- Lindskog S (1997). “Structure and mechanism of carbonic anhydrase”. Pharmacology & Therapeutics. 74 (1): 1–20. doi:10.1016/S0163-7258(96)00198-2. PMID 9336012.
The uncatalyzed reverse reaction is relatively slow (kinetics in the 15-second range). This is why a carbonated drink does not instantly degas when opening the container; however, it will rapidly degas in the mouth when it comes in contact with carbonic anhydrase that is contained in saliva.
- Thatcher BJ, Doherty AE, Orvisky E, Martin BM, Henkin RI (September 1998). “Gustin from human parotid saliva is carbonic anhydrase VI”. Biochemical and Biophysical Research Communications. 250 (3): 635–41. doi:10.1006/bbrc.1998.9356. PMID 9784398.
An anhydrase is defined as an enzyme that catalyzes the removal of a water molecule from a compound, and so it is this “reverse” reaction that gives carbonic anhydrase its name, because it removes a water molecule from carbonic acid.
In the lungs carbonic anhydrase converts bicarbonate to carbon dioxide, suited for exhalation.
CO2 transport
Carbon dioxide is transported in the blood in three forms:
- Dissolved as gas in plasma – 7-10%
- Bound to hemoglobin as carbaminohemoglobin in red blood cells – 20%
- Present as bicarbonate ion in plasma and transported as bicarbonate – 70%
- Yadav RR, Krishnamurthi K, Mudliar SN, Devi SS, Naoghare PK, Bafana A, Chakrabarti T (June 2014). “Carbonic anhydrase mediated carbon dioxide sequestration: promises, challenges and future prospects”. Journal of Basic Microbiology. 54 (6): 472–481. doi:10.1002/jobm.201300849. PMID 24740638. S2CID 29177837.
Mechanism
A zinc prosthetic group in the enzyme is coordinated in three positions by histidine side-chains. The fourth coordination position is occupied by water. A fourth histidine is close to the water ligand, facilitating formation of Zn-OH center, which binds CO2 to give a zinc bicarbonate. The construct is an example of general acid – general base catalysis (see the article “Acid catalysis“). The active site also features a pocket suited for carbon dioxide, bringing it close to the hydroxide group. Kinetic studies performed determine the following mechanism for the enzyme: In Step 1 & 2, the nucleophile O− on the hydroxide ion coordinated to Zn2+ performs a nucleophilic attack on the partially electrophilic carbon on the CO2 molecule. Here the Zn2+ acts as a Lewis acid that lowers the pKa of the coordinated OH2 ligand from ~7-8 down to 6.8 as Td , which drives the deprotonation of water to a hydroxide ion and the free proton is neutralized by the surrounding buffer. In step 3), a proton transfer (H+) occurs from the OH−1 to the non-coordinated O− in CO3−2 coordinated to the Zn+2 atom in the active site. Next, a bicarbonate ion is released and the catalytic site is regenerated through the binding of another water molecule in exchange for the bicarbonate ion . In step 4), the coordinated water ligand is deprotonated facilitated by the Zn+2 to generate another hydroxide ion to start the cycle over again.
- Parkin G (February 2004). “Synthetic analogues relevant to the structure and function of zinc enzymes”. Chemical Reviews. 104 (2): 699–767. doi:10.1021/cr0206263. PMID 14871139. S2CID 9857226.
- Berg JM, Tymoczko JL, Stryer L (2013). Stryer Biochemie. doi:10.1007/978-3-8274-2989-6. ISBN 978-3-8274-2988-9.
- Goto M, Takahashi T, Yamashita F, Koreeda A, Mori H, Ohta M, Arakawa Y (November 1997). “Inhibition of the metallo-beta-lactamase produced from Serratia marcescens by thiol compounds”. Biological & Pharmaceutical Bulletin. 20 (11): 1136–1140. doi:10.1021/ar9501232. PMID 9401719.
Families
At least five distinct CA families are recognized: α, β, γ, δ and ζ. These families have no significant amino acid sequence similarity and in most cases are thought to be an example of convergent evolution. The α-CAs are found in humans.
α-CA
Vertebrates, algae and some bacteria have this family of CAs.
The CA enzymes found in mammals are divided into four broad subgroups,[citation needed] which, in turn consist of several isoforms:
- the cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII) (CA1, CA2, CA3, CA7, CA13)
- mitochondrial CAs (CA-VA and CA-VB) (CA5A, CA5B)
- secreted CAs (CA-VI) (CA6)
- membrane-associated CAs (CA-IV, CA-IX, CA-XII, CA-XIV and CA-XV) (CA4, CA9, CA12, CA14)
There are three additional “acatalytic” human carbonic anhydrase isoforms (CA-VIII, CA-X, and CA-XI) (CA8, CA10, CA11) whose functions remain unclear.
- Lovejoy DA, Hewett-Emmett D, Porter CA, Cepoi D, Sheffield A, Vale WW, Tashian RE (December 1998). “Evolutionarily conserved, “acatalytic” carbonic anhydrase-related protein XI contains a sequence motif present in the neuropeptide sauvagine: the human CA-RP XI gene (CA11) is embedded between the secretor gene cluster and the DBP gene at 19q13.3″. Genomics. 54 (3): 484–93. doi:10.1006/geno.1998.5585. PMID 9878252.
Isoform | Gene | Molecular mass (kDa) | Location | Specific activity of human enzymes,[a] (s−1) | Sensitivity to sulfonamides,[b] KI (nM) | |
---|---|---|---|---|---|---|
Cell | Tissue | |||||
CA-I | CA1 | 29 | cytosol | red blood cell and GI tract | 2.0 × 105 | 250 |
CA-II | CA2 | 29 | cytosol | almost ubiquitous | 1.4 × 106 | 12 |
CA-III | CA3 | 29 | cytosol | 8% of soluble protein in Type I muscle | 1.3 × 104 | 240000 |
CA-IV | CA4 | 35 | extracellular GPI-linked | GI tract, kidney, endothelium | 1.1 × 106 | 74 |
CA-VA | CA5A | 34.7 (predicted) | mitochondria | liver | 2.9 × 105 | 63 |
CA-VB | CA5B | 36.4 (predicted) | mitochondria | widely distributed | 9.5 × 105 | 54 |
CA-VI | CA6 | 39–42 | secretory | saliva and milk | 3.4 × 105 | 11 |
CA-VII | CA7 | 29 | cytosol | widely distributed | 9.5 × 105 | 2.5 |
CA-IX | CA9 | 54, 58 | cell membrane-associated | normal GI tract, several cancers | 3.8 × 105 | 16 |
CA-XII | CA12 | 44 | extracellularily located active site | kidney, certain cancers | 4.2 × 105 | 5.7 |
CA-XIII | CA13 | 29 | cytosol | widely distributed | 1.5 × 105 | 16 |
CA-XIV | CA14 | 54 | extracellularily located active site | kidney, heart, skeletal muscle, brain | 3.1 × 105 | 41 |
CA-XV | CA15 | 34–36 | extracellular GPI-linked | kidney, not expressed in human tissues | 4.7 × 105 | 72 |
- Except for mouse CA XV.
- Acetazolamide in this table.
- Boriack-Sjodin PA, Zeitlin S, Chen HH, Crenshaw L, Gross S, Dantanarayana A, et al. (December 1998). “Structural analysis of inhibitor binding to human carbonic anhydrase II”. Protein Science. 7 (12): 2483–9. doi:10.1002/pro.5560071201. PMC 2143894. PMID 9865942.
- Unless else specified: Boron WF (2005). Medical Physiology: A Cellular And Molecular Approach. Elsevier/Saunders. ISBN 978-1-4160-2328-9. Page 638
- Hilvo M, Baranauskiene L, Salzano AM, Scaloni A, Matulis D, Innocenti A, et al. (October 2008). “Biochemical characterization of CA IX, one of the most active carbonic anhydrase isozymes”. The Journal of Biological Chemistry. 283 (41): 27799–809. doi:10.1074/jbc.M800938200. PMID 18703501.
- Lehtonen J, Shen B, Vihinen M, Casini A, Scozzafava A, Supuran CT, et al. (January 2004). “Characterization of CA XIII, a novel member of the carbonic anhydrase isozyme family”. The Journal of Biological Chemistry. 279 (4): 2719–27. doi:10.1074/jbc.M308984200. PMID 14600151.
- Hilvo M, Tolvanen M, Clark A, Shen B, Shah GN, Waheed A, et al. (November 2005). “Characterization of CA XV, a new GPI-anchored form of carbonic anhydrase”. The Biochemical Journal. 392 (Pt 1): 83–92. doi:10.1042/BJ20051102. PMC 1317667. PMID 16083424.
β-CA
Most prokaryotic and plant chloroplast CAs belong to the beta family. Two signature patterns for this family have been identified:
- C-[SA]-D-S-R-[LIVM]-x-[AP]
- [EQ]-[YF]-A-[LIVM]-x(2)-[LIVM]-x(4)-[LIVMF](3)-x-G-H-x(2)-C-G
γ-CA
The gamma class of CAs come from methanogens, methane-producing bacteria that grow in hot springs.
δ-CA
The delta class of CAs has been described in diatoms. The distinction of this class of CA has recently come into question, however.
- Sawaya MR, Cannon GC, Heinhorst S, Tanaka S, Williams EB, Yeates TO, Kerfeld CA (March 2006). “The structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two”. The Journal of Biological Chemistry. 281 (11): 7546–55. doi:10.1074/jbc.M510464200. PMID 16407248.
ζ-CA
The zeta class of CAs occurs exclusively in bacteria in a few chemolithotrophs and marine cyanobacteria that contain cso-carboxysomes. Recent 3-dimensional analyses suggest that ζ-CA bears some structural resemblance to β-CA, particularly near the metal ion site. Thus, the two forms may be distantly related, even though the underlying amino acid sequence has since diverged considerably.
- Sawaya MR, Cannon GC, Heinhorst S, Tanaka S, Williams EB, Yeates TO, Kerfeld CA (March 2006). “The structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two”. The Journal of Biological Chemistry. 281 (11): 7546–55. doi:10.1074/jbc.M510464200. PMID 16407248
- So AK, Espie GS, Williams EB, Shively JM, Heinhorst S, Cannon GC (February 2004). “A novel evolutionary lineage of carbonic anhydrase (epsilon class) is a component of the carboxysome shell”. Journal of Bacteriology. 186 (3): 623–30. doi:10.1128/JB.186.3.623-630.2004. PMC 321498. PMID 14729686.
η-CA
The eta family of CAs was recently found in organisms of the genus Plasmodium. These are a group of enzymes previously thought to belong to the alpha family of CAs, however it has been demonstrated that η-CAs have unique features, such as their metal ion coordination pattern.
- Del Prete S, Vullo D, Fisher GM, Andrews KT, Poulsen SA, Capasso C, Supuran CT (September 2014). “Discovery of a new family of carbonic anhydrases in the malaria pathogen Plasmodium falciparum—the η-carbonic anhydrases”. Bioorganic & Medicinal Chemistry Letters. 24 (18): 4389–4396. doi:10.1016/j.bmcl.2014.08.015. hdl:10072/63103. PMID 25168745.
ι-CA
The iota class is the most recent class of CAs described. It has been discovered in the marine diatom Thalassiosira pseudonana, and is widespread among marine phytoplankton. In diatoms, the ι-CA is essential for the CO2-concentrating mechanisms and – in contrast to other CA classes – it can use manganese instead of zinc as metal cofactor. Homologs of the ι-CA have been also confirmed in gram-negative bacteria, where can be present as a protein homodimer.
- Jensen EL, Clement R, Kosta A, Maberly SC, Gontero B (August 2019). “A new widespread subclass of carbonic anhydrase in marine phytoplankton”. The ISME Journal. 13 (8): 2094–2106. doi:10.1038/s41396-019-0426-8. PMC 6776030. PMID 31024153.
- Del Prete S, Nocentini A, Supuran CT, Capasso C (December 2020). “Burkholderia territorii”. Journal of Enzyme Inhibition and Medicinal Chemistry. 35 (1): 1060–1068. doi:10.1080/14756366.2020.1755852. PMC 7191908. PMID 32314608.
Structure and function
Several forms of carbonic anhydrase occur in nature. In the best-studied α-carbonic anhydrase form present in animals, the zinc ion is coordinated by the imidazole rings of 3 histidine residues, His94, His96, and His119.
- Krishnamurthy VM, Kaufman GK, Urbach AR, Gitlin I, Gudiksen KL, Weibel DB, Whitesides GM (March 2008). “Carbonic anhydrase as a model for biophysical and physical-organic studies of proteins and protein-ligand binding”. Chemical Reviews. 108 (3): 946–1051. doi:10.1021/cr050262p. PMC 2740730. PMID 18335973.
The primary function of the enzyme in animals is to interconvert carbon dioxide and bicarbonate to maintain acid-base balance in blood and other tissues, and to help transport carbon dioxide out of tissues.
There are at least 14 different isoforms in mammals. Plants contain a different form called β-carbonic anhydrase, which, from an evolutionary standpoint, is a distinct enzyme, but participates in the same reaction and also uses a zinc ion in its active site. In plants, carbonic anhydrase helps raise the concentration of CO2 within the chloroplast in order to increase the carboxylation rate of the enzyme RuBisCO. This is the reaction that integrates CO2 into organic carbon sugars during photosynthesis, and can use only the CO2 form of carbon, not carbonic acid or bicarbonate.[citation needed]
Cadmium-containing carbonic anhydrase
Marine diatoms have been found to express a new form of ζ carbonic anhydrase. T. weissflogii, a species of phytoplankton common to many marine ecosystems, was found to contain carbonic anhydrase with a cadmium ion in place of zinc. Previously, it had been believed that cadmium was a toxic metal with no biological function whatsoever. However, this species of phytoplankton appears to have adapted to the low levels of zinc in the ocean by using cadmium when there is not enough zinc. Although the concentration of cadmium in sea water is also low (about 1×10−16 molar), there is an environmental advantage to being able to use either metal depending on which is more available at the time. This type of carbonic anhydrase is therefore cambialistic, meaning it can interchange the metal in its active site with other metals (namely, zinc and cadmium).
- Park H, McGinn PJ, More FM (19 May 2008). “Expression of cadmium carbonic anhydrase of diatoms in seawater”. Aquatic Microbial Ecology. 51: 183–193. doi:10.3354/ame01192.
- Lane TW, Saito MA, George GN, Pickering IJ, Prince RC, Morel FM (May 2005). “Biochemistry: a cadmium enzyme from a marine diatom”. Nature. 435 (7038): 42. Bibcode:2005Natur.435…42L. doi:10.1038/435042a. PMID 15875011. S2CID 52819760.
- Bertini et al. (2007), p. [page needed].
Similarities to other carbonic anhydrases
The mechanism of cadmium carbonic anhydrase (CDCA) is essentially the same as that of other carbonic anhydrases in its conversion of carbon dioxide and water into bicarbonate and a proton. Additionally, like the other carbonic anhydrases, CDCA makes the reaction go almost as fast as the diffusion rate of its substrates, and it can be inhibited by sulfonamide and sulfamate derivatives.
- Sigel A, Sigel H, Sigel RK (2013). Cadmium from toxicity to essentiality. Dordrecht: Springer. ISBN 978-94-007-5179-8.
Differences from other carbonic anhydrases
Unlike most other carbonic anhydrases, the active site metal ion is not bound by three histidine residues and a hydroxide ion. Instead, it is bound by two cysteine residues, one histidine residue, and a hydroxide ion, which is characteristic of β-CA. Due to the fact that cadmium is a soft acid, it will be more tightly bound by soft base ligands. The sulfur atoms on the cysteine residues are soft bases, thus binding the cadmium more tightly than the nitrogen on histidine residues would. CDCA also has a three-dimensional folding structure that is unlike any other carbonic anhydrase, and its amino acid sequence is dissimilar to the other carbonic anhydrases. It is a monomer with three domains, each one identical in amino acid sequence and each one containing an active site with a metal ion.
- Bertini et al. (2007), p. [page needed].
- Sigel A, Sigel H, Sigel RK (2013). Cadmium from toxicity to essentiality. Dordrecht: Springer. ISBN 978-94-007-5179-8.
- Xu Y, Feng L, Jeffrey PD, Shi Y, Morel FM (March 2008). “Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms”. Nature. 452 (7183): 56–61. Bibcode:2008Natur.452…56X. doi:10.1038/nature06636. PMID 18322527. S2CID 4420280.
Another key difference between CDCA and the other carbonic anhydrases is that CDCA has a mechanism for switching out its cadmium ion for a zinc ion in the event that zinc becomes more available to the phytoplankton than cadmium. The active site of CDCA is essentially “gated” by a chain of nine amino acids with glycine residues at positions 1 and 9. Normally, this gate remains closed and the cadmium ion is trapped inside. However, due to the flexibility and position of the glycine residues, this gate can be opened in order to remove the cadmium ion. A zinc ion can then be put in its place and the gate will close behind it. As a borderline acid, zinc will not bind as tightly to the cysteine ligands as cadmium would, but the enzyme will still be active and reasonably efficient. The metal in the active site can be switched between zinc and cadmium depending on which one is more abundant at the time. It is the ability of CDCA to utilize either cadmium or zinc that likely gives T. weissflogii a survival advantage.
- Lane TW, Saito MA, George GN, Pickering IJ, Prince RC, Morel FM (May 2005). “Biochemistry: a cadmium enzyme from a marine diatom”. Nature. 435 (7038): 42. Bibcode:2005Natur.435…42L. doi:10.1038/435042a. PMID 15875011. S2CID 52819760.
- Sigel A, Sigel H, Sigel RK (2013). Cadmium from toxicity to essentiality. Dordrecht: Springer. ISBN 978-94-007-5179-8.
Transport of cadmium
Cadmium is still considered lethal to phytoplankton in high amounts. Studies have shown that T. weissflogii has an initial toxic response to cadmium when exposed to it. The toxicity of the metal is reduced by the transcription and translation of phytochelatin, which are proteins that can bind and transport cadmium. Once bound by phytochelatin, cadmium is no longer toxic, and it can be safely transported to the CDCA enzyme. It’s also been shown that the uptake of cadmium via phytochelatin leads to a significant increase in CDCA expression.
- Park H, McGinn PJ, More FM (19 May 2008). “Expression of cadmium carbonic anhydrase of diatoms in seawater”. Aquatic Microbial Ecology. 51: 183–193. doi:10.3354/ame01192.
CDCA-like proteins
Other phytoplankton from different water sources have been tested for the presence of CDCA. It was found that many of them contain proteins that are homologous to the CDCA found in T. weissflogii. This includes species from Great Bay, New Jersey as well as in the Pacific Ocean near the equator. In all species tested, CDCA-like proteins showed high levels of expression even in high concentrations of zinc and in the absence of cadmium. The similarity between these proteins and the CDCA expressed by T. weissflogii varied, but they were always at least 67% similar.
- Park H, McGinn PJ, More FM (19 May 2008). “Expression of cadmium carbonic anhydrase of diatoms in seawater”. Aquatic Microbial Ecology. 51: 183–193. doi:10.3354/ame01192.
Carbon capture and sequestration
Further information: Carbon capture and storage
Carbonic anhydrase could in principle prove relevant to carbon capture. Some carbonic anhydrases can withstand temperatures up to 107 °C and extreme alkalinity (pH > 10). A pilot run with the more stable CA on a flue stream that consisted of 12–13% mol composition CO₂ had a capture rate of 63.6% over a 60-hour period with no noticeable effects in enzyme performance. CA was placed in a N-methyldiethanolamine (MDEA) solution where it served to increase the concentration difference (driving force) of CO2 between the flue stream of the power plant and liquid phase in a liquid-gas contactor.
- Alvizo O, Nguyen LJ, Savile CK, Bresson JA, Lakhapatri SL, Solis EO, et al. (November 2014). “Directed evolution of an ultrastable carbonic anhydrase for highly efficient carbon capture from flue gas”. Proceedings of the National Academy of Sciences of the United States of America. 111 (46): 16436–41. Bibcode:2014PNAS..11116436A. doi:10.1073/pnas.1411461111. PMC 4246266. PMID 25368146.
See also
Carbonic anhydrase inhibitor
Carbonic anhydrase inhibitors are a class of pharmaceuticals that suppress the activity of carbonic anhydrase. Their clinical use has been established as anti-glaucoma agents, diuretics, antiepileptics, in the management of mountain sickness, gastric and duodenal ulcers, idiopathic intracranial hypertension, neurological disorders, or osteoporosis.
- Supuran CT, Scozzafava A, Conway J, eds. (2004). Carbonic anhydrase: its inhibitors and activators. Boca Raton: CRC Press. ISBN 978-0-415-30673-7.[page needed]
- Supuran, Claudiu T; Scozzafava, Andrea (2000). “Carbonic anhydrase inhibitors and their therapeutic potential”. Expert Opinion on Therapeutic Patents. 10 (5): 575–600. doi:10.1517/13543776.10.5.575. S2CID 86519198.
- Supuran, Claudiu T.; Scozzafava, Andrea; Casini, Angela (2003). “Carbonic anhydrase inhibitors”. Medicinal Research Reviews. 23 (2): 146–89. doi:10.1002/med.10025. PMID 12500287.
Medical uses
Carbonic anhydrase inhibitors are primarily used for the treatment of glaucoma. They may also be used to treat seizure disorder and acute mountain sickness. Because they encourage solubilization and excretion of uric acid, they can be used in the treatment of gout.
Glaucoma
Acetazolamide is an inhibitor of carbonic anhydrase. It is used for glaucoma, epilepsy (rarely), idiopathic intracranial hypertension, and altitude sickness.
For the reduction of intraocular pressure (IOP), acetazolamide inactivates carbonic anhydrase and interferes with the sodium pump, which decreases aqueous humor formation and thus lowers IOP. Systemic effects include increased loss of sodium, potassium, and water in the urine, secondary to the drug’s effects on the renal tubules, where valuable components of filtered blood are re-absorbed in the kidney. Arterial Blood gases may show a mild hyperchloremic metabolic acidosis.
- “Acetazolamide: mechanism of action”. www.openanesthesia.org. Retrieved 2017-05-10.
Methazolamide is also a carbonic anhydrase inhibitor. It has a longer elimination half-life than acetazolamide and is less associated with adverse effects to the kidney.
- Bennett WM, Aronoff GR, Golper TA, et al, Drug Prescribing in Renal Failure, American College of Physicians, Philadelphia, PA, 1987[page needed]
- Product Information: Neptazane(R), methazolamide. Storz Ophthalmics Inc, Clearwater, FL, 1995a[page needed]
- Reynolds JEF (Ed): Martle: The Extra Pharmacopoeia (electronic version). Micromedex, Inc. Englewood, CO. 1995.[page needed]
Dorzolamide is a sulfonamide and topical carbonic anhydrase II inhibitor. It is indicated for the reduction of elevated intraocular pressure in patients with open-angle glaucoma or ocular hypertension and who are insufficiently responsive to beta-blockers. Inhibition of carbonic anhydrase II in the ciliary processes of the eye decreases aqueous humor secretion, presumably by slowing the formation of bicarbonate ions with subsequent reduction in sodium and fluid transport.[citation needed]
Brinzolamide (trade names Azopt, Alcon Laboratories, Inc, Befardin Fardi Medicals) is a carbonic anhydrase inhibitor used to lower intraocular pressure in patients with open-angle glaucoma or ocular hypertension. It exists as a number of isoenzymes, the most active of which is carbonic anhydrase II (CA-II). The combination of brinzolamide with timolol is marketed under the trade name Azarga.[citation needed]
Diuretic
Some diuretics inhibit the activity of carbonic anhydrase in proximal convoluted tubules and prevent reabsorption of bicarbonates from renal tubules. Lowered reabsorption of bicarbonates results in decreased activity of the apical sodium hydrogen exchanger, causing diuresis due to retention of sodium in the renal tubules. Acetazolamide is a carbonic anhydrase inhibitor. Other examples are;
- Dorzolamide
- Methazolamide
- Brinzolamide
- Dichlorphenamide
- “Diuretics Pharmacology : Classification Of Diuretics & Medicinal Uses – PDF Download”. my-pharma-notes.blogspot.com. 6 January 2018.
CSF regulation
Carbonic anhydrase inhibitors may be used to reduce the production of cerebrospinal fluid (CSF) in the brain. For instance, a cerebrospinal fluid leak may initially be treated medically with this medication to reduce the volume of leakage, and promote healing of the fistula. Similarly, in Idiopathic intracranial hypertension, reduction of CSF production by the choroid plexi may reduce intracranial pressures and reduce symptoms of elevated intracranial pressure such as retroorbital headaches and loss of vision. The mechanism is thought to involve inhibition of carbonic anhydrase (CA) within the choroidal epithelial cells, reducing the production of protons which are necessary for the osmotic transport of water and ions which constitute CSF.
Epilepsy
Acetazolamide is effective in the treatment of most types of seizures, including generalized tonic-clonic and focal seizures and especially absence seizures, although it has limited utility because tolerance develops with chronic use. The drug is occasionally used on an intermittent basis to prevent seizures in catamenial epilepsy.
- Rogawski MA, Porter RJ (1990). “Antiepileptic drugs: pharmacological mechanisms and clinical efficacy with consideration of promising developmental stage compounds”. Pharmacol. Rev. 42 (3): 223–86. PMID 2217531. Archived from the original on 2016-11-24. Retrieved 2016-11-24
The sulfur-containing antiseizure and antimigraine drug topiramate is a weak inhibitor of carbonic anhydrase, particularly subtypes II and IV. Whether carbonic anhydrase inhibition contributes to its clinical activity is not known. In rare cases, the inhibition of carbonic anhydrase may be strong enough to cause metabolic acidosis of clinical importance. Zonisamide is another sulfur containing antiseizure drug that weakly inhibits carbonic anhydrase.
- Rogawski MA, Löscher W, Rho JM (2016). “Mechanisms of action of antiseizure drugs and the ketogenic diet”. Cold Spring Harb Perspect Med. 6 (5): 223–86. doi:10.1101/cshperspect.a022780. PMC 4852797. PMID 26801895.
Sultiame is also an example of an anticonvulsant drug of this class.
Altitude sickness
Main article: Altitude sickness
At high altitude, the partial pressure of oxygen is lower and people have to breathe more rapidly to get adequate oxygen. When this happens, the partial pressure of CO2 in the lungs (pCO2) decreases (is “blown off”), causing a respiratory alkalosis. This would normally be compensated by the kidney excreting bicarbonate and causing compensatory metabolic acidosis, but this mechanism takes several days. A more immediate treatment is carbonic anhydrase inhibitors, which prevent bicarbonate uptake in the kidney and help correct the alkalosis. Carbonic anhydrase inhibitors have also been shown to improve chronic mountain sickness.
- Swenson, Erik R. (2014). “Carbonic Anhydrase Inhibitors and High Altitude Illnesses”. In Frost, Susan C.; McKenna, Robert (eds.). Carbonic Anhydrase: Mechanism, Regulation, Links to Disease, and Industrial Applications. Subcellular Biochemistry. Vol. 75. pp. 361–86. doi:10.1007/978-94-007-7359-2_18. ISBN 978-94-007-7358-5. PMID 24146388.
- Richalet, Jean-Paul; Rivera, Maria; Bouchet, Patrick; Chirinos, Eduardo; Onnen, Igor; Petitjean, Olivier; Bienvenu, Annick; Lasne, Francçoise; Moutereau, Stéphane; León-Velarde, Fabiola (2005). “Acetazolamide”. American Journal of Respiratory and Critical Care Medicine. 172 (11): 1427–33. doi:10.1164/rccm.200505-807OC. PMID 16126936.
Contraindications
- Webster, L. T.; Davidson, C. S. (1956). “Production of Impending Hepatic Coma by a Carbonic Anhydrase Inhibitor, Diamox”. Experimental Biology and Medicine. 91 (1): 27–31. doi:10.3181/00379727-91-22159. PMID 13297699. S2CID 40178475.
Adverse effects
Loss of bicarbonate may result in metabolic acidosis.
- Leaf, Alexander; Schwartz, William B.; Relman, Arnold S. (1954). “Oral Administration of a Potent Carbonic Anhydrase Inhibitor (Diamox)”. New England Journal of Medicine. 250 (18): 759–64. doi:10.1056/NEJM195405062501803. PMID 13165895.
In plants
Ellagitannins extracted from the pericarps of Punica granatum, the pomegranate, such as punicalin, punicalagin, granatin B, gallagyldilactone, casuarinin, pedunculagin and tellimagrandin I, are carbonic anhydrase inhibitors.
- Satomi, H; Umemura, K; Ueno, A; Hatano, T; Okuda, T; Noro, T (1993). “Carbonic anhydrase inhibitors from the pericarps of Punica granatum L”. Biological & Pharmaceutical Bulletin. 16 (8): 787–90. doi:10.1248/bpb.16.787. PMID 8220326.
Further reading
- Lyall V, Alam RI, Phan DQ, Ereso GL, Phan TH, Malik SA, et al. (September 2001). “Decrease in rat taste receptor cell intracellular pH is the proximate stimulus in sour taste transduction”. American Journal of Physiology. Cell Physiology. 281 (3): C1005-13. doi:10.1152/ajpcell.2001.281.3.C1005. PMID 11502578.
External links
- Overview of all the structural information available in the PDB for UniProt: P00918 (Human Carbonic anhydrase 2) at the PDBe-KB.
- Carbonic+anhydrase+inhibitors at the US National Library of Medicine Medical Subject Headings (MeSH)
- MedlinePlus DrugInfo uspdi-202114
Carbon–oxygen lyases (EC 4.2) (primarily dehydratases) |
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